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LabNotes

October 2007 LabNotes


An electronic newsletter from the Marine Biological Laboratory

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Publications:

Alliegro, MC; Alliegro, MA. 2007. Echinonectin is a Del-1-like molecule with regulated expression in sea urchin embryos. Gene Expression Patterns. 7 (6): 651-656.

Aratyn, YS; Schaus, TE; Taylor, EW; Borisy, GG. 2007. Intrinsic dynamic behavior of fascin in filopodia. Molecular Biology of the Cell. 18 (10): 3928-3940.

Balshi, MS; McGuire, AD; Zhuang, Q; Melillo, J; Kicklighter, DW; Kasischke, E; Wirth, C; Flannigan, M; Harden, J; Clein, JS; Burnside, TJ; McAllister, J; Kurz, WA; Apps, M; Shvidenko, A. 2007. The role of historical fire disturbance in the carbon dynamics of the pan-boreal region: A process-based analysis. Journal of Geophysical Research G: Biogeosciences. 112 (G2): Art. No. G02029.

Bordenstein, SR; Werren, JH. 2007. Bidirectional incompatibility among divergent Wolbachia and incompatibility level differences among closely related Wolbachia in Nasonia. Heredity. 99 (3): 278-287.

Brown, MT; Goldstone, HMH; Bastida-Corcuera, F; Delgadillo-Correa, MG; McArthur, AG; Johnson, PJ. 2007. A functionally divergent hydrogenosomal peptidase with protomitochondrial ancestry. Molecular Microbiology. 64 (5): 1154-1163.

Chapman, M; Alliegro, MC. 2007. A symbiogenetic basis for the centrosome? Symbiosis. 44 (1-3): 23-31.

Chiou, T-H; Mathger, LM; Hanlon, RT; Cronin, TW. 2007. Spectral and spatial properties of polarized light reflections from the arms of squid (Loligo pealeii) and cuttlefish (Sepia officinalis L.). Journal of Experimental Biology. 210 (20): 3624-3635.

Chlao, Chuan-Chin; Chubb, Charles; Hanlon, Roger T. 2007. Interactive effects of size, contrast, intensity and configuration of background objects in evoking disruptive camouflage in cuttlefish. Vision Research. 47 (16): 2223-2235.

Crump, BC; Adams, HE; Hobbie, JE; Kling, GW. 2007. Biogeography of bacterioplankton in lakes and streams of an arctic tundra catchment. Ecology. 88 (6): 1365-1378.

Deegan, LA; Bowen, JL; Drake, D; Fleeger, JW; Friedrichs, CT; Galvan, KA; Hobble, JE; Hopkinson, C; Johnson, DS; Johnson, JM; Lemay, LE; Miller, E; Peterson, BJ; Picard, C; Sheldon, S; Sutherland, M; Vallino, J; Warren, RS. 2007. Susceptibility of salt marshes to nutrient enrichment and predator removal. Ecological Applications. 17 (sp5) : S42-S63.

Douma, JC; Van Wijk, MT; Lang, SI; Shaver, GR. 2007. The contribution of mosses to the carbon and water exchange of arctic ecosystems: quantification and relationships with system properties. Plant Cell and Environment. 30 (10): 1205-1215.

Gerlach, G; Hodgins-Davis, A; MacDonald, B; Hannah, RC. 2007. Benefits of kin association: related and familiar zebrafish larvae (Danio rerio) show improved growth. Behavioral Ecology & Sociobiology. 61 (11): 1765-1770.

Goldstone, JV; Goldstone, HMH; Morrison, AM; Tarrant, A; Kern, SE; Woodin, BR; Stegeman, JJ. 2007. Cytochrome P450 1 genes in early deuterostomes (tunicates and sea urchins) and vertebrates (chicken and frog): origin and diversification of the CYP1 gene family. Molecular Biology and Evolution. E-first: 10.1093/molbev/msm200

Greenberg RM. 2007. Molecular target of the antischistosomal drug praziquantel. Future Microbiology. 2 (3): 265-268.

Greulich, KO; Khodjakov, A; Vogt, A; Berns, MW. 2007. Sergej Stepanovich Tschachotin: experimental cytologist and political critic (1883-1973). Methods in Cell Biology. 82: 725-734.

Gribble, KE; Nolan, G; Anderson, DM. 2007. Biodiversity, biogeography, and potential trophic impact of Protoperidinium spp. (Dinophyceae) off the southwestern coast of Ireland. Journal of Plankton Research. E-first: 10.1093/plankt/fbm070

Hegan, PS; Mermall, V; Tilney, LG; Mooseker, MS. 2007. Roles for Drosophila melanogaster Myosin IB in maintenance of enterocyte brush border structure and resistance to the bacterial pathogen, Pseudomonas entomophila. Molecular Biology of the Cell. 18 (11): 4625-4636.

Hegreness, M; Meselson, M. 2007. What did Sutton see?: thirty years of confusion over the chromosomal basis of mendelism. Genetics 176 (4): 1939-1944.

Hu, Z; Corwin, JT. 2007. Inner ear hair cells produced in vitro by a mesenchymal-to-epithelial transition. Proceedings of the National Academy of Sciences. E-first: 10.1073/pnas.0704576104

Huang, JL; Gogarten, JP. 2007. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biology. 8 (6): Art. No. R99.

Huber, JA; Welch, DBM; Morrison, HG; Huse, SM; Neal, PR; Butterfield, DA; Sogin, ML. 2007. Microbial population structures in the deep marine biosphere. Science. 318 (5847): 97-100.

Huse, SM; Huber, JA; Morrison, HG; Sogin, ML; Welch, DM. 2007. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology. 8 (7): Art. No. R143.

Ioannidis, P; Hotopp, JCD; Sapountzis, P; Siozios, S; Tsiamis, G; Bordenstein, SR; Baldo, L; Werren, JH; Bourtzis, K. 2007. New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria. BMC Genomics. 8: Art. No. 182.

Kennish, MJ; Bricker, SB; Dennison, WC; Glibert, PM; Livingston, RJ; Moore, KA; Noble, RT; Paerl, HW; Ramstack, JM; Seitzinger, S; Tomasko, DA; Valiela, I. 2007. Barnegat Bay-Little Egg Harbor Estuary: case study of a highly eutrophic coastal bay system. Ecological Applications. 17 (sp5): S3-S16.

Kreitzer, MA; Collis, LP; Molina, AJA; Smith, PJS; Malchow, RP. 2007. Modulation of extracellular proton fluxes from retinal horizontal cells of the catfish by depolarization and glutamate. Journal of General Physiology. 130 (2): 169-182.

Leary, PR; Remsen, DP; Norton, CN; Patterson, DJ; Sarkar, IN. 2007. uBioRSS: Tracking Taxonomic Literature Using RSS. Bioinformatics. 23 (11):1434-1436.

Lee, KG; Kerr, LM; Cohen, WD. 2007. Molecular organization and in vivo function of the cytoskeleton of amphibian erythrocytes. Cell Mobility and the Cytoskeleton. 64 (8): 621-628.

Lyons, MM; Smolowitz, R; Gomez-Chiarri, M; Ward, JE. 2007. Epizootiology of Quahog Parasite unknown (QPX) disease in northern quahogs (=hard clams) Mercenaria mercenaria. Journal of Shellfish Research. 26 (2): 371-381.

Magidson, V; Loncarek, J; Hergert, P; Rieder, CL; Khodjakov, A. 2007. Laser microsurgery in the GFP era: a cell biologist's perspective. Methods in Cell Biology. 82: 239-266.

Mäthger, LM; Chiao, C-C; Barbosa, A; Buresch, KC; Kaye, S; Hanlon, RT. 2007. Disruptive coloration elicited on controlled natural substrates in cuttlefish, Sepia officinalis. Journal of Experimental Biology. 210 (15): 2657-2666.

McHorney, R; Neill, C. 2007. Alteration of water levels in a Massachusetts coastal plain pond subject to municipal ground-water withdrawals. Wetlands. 27 (2): 366-380.

Meselson, M; Welch, DM. 2007. Evolution: stable heterozygosity? Science. 318 (5848): 202-203.

Mohan, JE; Clark, JS; Schlesinger, WH. 2007. Long-term CO2 enrichment of a forest ecosystem: implications for forest regeneration and succession. Ecological Applications. 17 (4): 1198-1212.

Morrison, HG; McArthur, AG; Gillin, FD; Aley, SB; Adam, RD; Olsen, GJ; Best, AA; Cande, WZ; Chen, F; Cipriano, MJ; Davids, BJ; Dawson, SC; Elmendorf, HG; Hehl, AB; Holder, ME; Huse, SM; Kim, UU; Lasek-Nesselquist, E; Manning, G; Nigam, A; Nixon, JEJ; Palm, D; Passamaneck, NE; Prabhu, A; Reich, CI; Reiner, DS; Samuelson, J; Svard, SG; Sogin, ML. 2007. Genomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia. Science. 317 (5846): 1921-1926.

Redenti S; Ripps H; Chappell RL. 2007. Zinc release at the synaptic terminals of rod photoreceptors. Experimental Eye Research. E-first: 10.1016/j.exer.2007.07.017

Sabella, C; Faszewski, E; Himic, L; Colpitts, KM; Kaltenbach, J; Burger, MM; Fernandez-Busquets, X. 2007. Cyclosporin A suspends transplantation reactions in the marine sponge Microciona prolifera. Journal of Immunology. 179 (9): 5927-5935.

Sarkar, IN. 2007. Biodiversity informatics: organizing anding information across the spectrum of life. Briefings in Bioinformatics. E-first: 10.1093/bib/bbm037

Seaver, G; Kuzirian, A. 2007. Nitrate migration through groundwater, estuaries, and bays at climatic frequencies and scales. Journal of Coastal Research. 23 (4): 1000-1009.

Shankfin, DR. 2007. Cellular magnesium acquisition: An anomaly in embryonic cation homeostasis. Experimental and Molecular Pathology. 83 (2): 224-240.

Shaver, GR; Street, LE; Rastetter, EB; Van Wijk, MT; Williams, M. 2007. Functional convergence in regulation of net CO2 flux in heterogeneous tundra landscapes in Alaska and Sweden. Journal of Ecology. 95 (4): 802-817.

Smith, SS; Pfluger, SL; Hjort, E; McArthur, AG; Hager, KM. 2007. Molecular evolution of the vesicle coat component beta COP in Toxoplasma gondii. Molecular Phylogenetics and Evolution. 44 (3): 1284-1294.

Sullivan, PF; Sommerkorn, M; Rueth, HM; Nadelhoffer, KJ; Shaver, GR; Welker, JM. 2007. Climate and species affect fine root production with long-term fertilization in acidic tussock tundra near Toolik Lake, Alaska. Oecologia. 153 (3): 643-652.

Sussman, R. 2007. DNA repair capacity of zebrafish. Proceedings of the National Academy of Sciences. 104 (33): 13379-13383.

Vaezeslami, S; Sterling, R; Reznikoff, WS. 2007. Site-directed mutagenesis studies of Tn5 transposase residues involved in synaptic complex formation. Journal of Bacteriology. 189 (20): 7436-7441.

Valiela, I; Martinetto, P. 2007. Bird migratory status and habitat. Bioscience. 57 (8): 645.

Weiss, E; Bennie, M; Hodgins-Davis, A; Roberts, S; Gerlach, G. 2007. Characterization of new SSR-EST markers in cod, Gadus morhua. Molecular Ecology Notes. 7 (5): 866-867.

Wilson, M; Hanlon, RT; Tyack, PL; Madsen, PT. 2007. Intense ultrasonic clicks from echolocating toothed whales do not elicit anti-predator responses or debilitate the squid Loligo pealeii. Biology Letters. 3 (3): 225-227.

Xu, NH; Chang, DC. 2007. Different thresholds of MPF inactivation are responsible for controlling different mitotic events in mammalian cell division. Cell Cycle. 6 (13): 1639-1645.

Ziska, LH; Sicher, RC; George, K; Mohan, JE. 2007. Rising atmospheric carbon dioxide and potential impacts on the growth and toxicity of poison ivy (Toxicodendron radicans). Weed Science. 55 (4): 288-292.

Zottoli SJ; Cioni C; Seyfarth EA. 2007. Reticulospinal neurons in anamniotic vertebrates: A celebration of Alberto Stefanelli's contributions to comparative neuroscience. Brain Research Bulletin. 74 (5): 295-306.



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